YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP4AE_RAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSVFTPTR SLDGVSGFFQ GAFLLSLFLV LFKAVQFYLR RQWLLKALEK FPSTPSHWLW  60
   61 GHDLKDREFQ QVLTWVEKFP GACLQWLSGS KTRVLLYDPD YVKVVLGRSD PKASGIYQFL 120
  121 APWIGYGLLL LNGKKWFQHR RMLTPAFHYG ILKPYVKIMA DSVNIMLDKW EKLDDQDHPL 180
  181 EIFHYVSLMT LDTVMKCAFS HQGSVQLDVN SRSYTKAVED LNNLTFFRVR SAFYGNSIIY 240
  241 NMSSDGRLSR RACQIAHEHT DGVIKMRKAQ LQNEEELQKA RKKRHLDFLD ILLFAKMEDG 300
  301 KSLSDEDLRA EVDTFMFEGH DTTASGISWV FYALATHPEH QERCREEVQS ILGDGTSVTW 360
  361 DHLDQIPYTT MCIKEALRLY PPVPSVSREL SSPVTFPDGR SIPKGITTTI LIYGLHHNPS 420
  421 YWPNPKVFDP SRFSPDSPRH SHAYLPFSGG ARNCIGKQFA MNELKVAVAL TLLRFELLPD 480
  481 PTRIPVPMAR LVLKSKNGIH LRLKKLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.56
Transmembrane Helix	16	37	0.85
Cytoplasmic	38	114	0.56
Transmembrane Helix	115	133	0.45
Non-Cytoplasmic	134	507	0.79