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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13929168, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRHLALLLL LLFFLQHFGD GDGSQRLEPT PSLQFTHVQY NVTVHENSAA KTYVGHPRKM  60
   61 GIYILDPSWE IRYKIISGDN ENLFKAEEYV LGDFCFLRIR TKGGNTAILN REVRDHYTLV 120
  121 IKAVEKVTDA EARAKVRVQV LDTNDLRPLF SPTSYSVSLP ENTAIRTSIA RVSATDADIG 180
  181 TNGEFYYSFK DRTDMFAIHP TSGVVVLTGR LDVLETQRYE LEILAVDRGM KLYGSSGVSS 240
  241 LAKLTVHVEQ ANECAPGITA VTLSPSELDK DPTYAIITVE DCDQGANGEI ASLSIVAGDL 300
  301 LQQFKTVRSF PGSKAFKVKA VGGVDWDSHP YGYNLTVQAK DKGTPPQFSP VKVIHVISPQ 360
  361 FRAGPVKFEM DVYRAEISEF APPHTPVVLV KAIPSYSHLR YVFKSTPGKP KFGLNHNTGL 420
  421 ISILEPIKRQ HTSHFELEVT TSDRRASTKV VVKVVGTNSN PPEFTQTSYK ASFDENAPVG 480
  481 TPVMRVSAVD PDEGENGYVT YSIANLNHVP FVIDHFTGAV STSENLDYEL MPRVYTLRIR 540
  541 ASDWGLPYRR EVEVLATITL NNLNDNTPLF EKTNCEGTIP RDLGVGEQIT TVSAIDADEL 600
  601 QLVRYQIEAG NELDLFGLNP SSGVLSLKHS LMDGLGAKVS FHSLRITATD GENFATPLYI 660
  661 NLTVAASRKP VNLRCEETGV AKMLAEKLLQ ANKLHHQGDA EDIFFDSHSV NAHAPQFRGS 720
  721 LPTGIEVKED LPVGASILFM NATDLDSGFN GKLVYAISGG NDDSCFTVDM ETGMLKVLSP 780
  781 LDREVTDKYT LNITVYDLGI PQRAAWRLLD VTVLDANDNA PEFLQESYFV EVSEDKEINS 840
  841 EIIQVEATDK DLGPSGHVTY AILTDTEKFA IDRVTGVVKI IQPLDREVQR VHYLKIEARD 900
  901 QATEEPWLSS TVLLKVSLDD VNDNPPRFIP PSYSVKVRED LPEGTIIMWL EAHDPDVGQS 960
  961 SQVRYSLLDH GEGHFDVDKL SGAVRIVQQL DFEKKQLYNL TVRAKDKGKP ASLSSTGYVE1020
 1021 VEVVDVNENL HAPVFSSFVE KGTVKEDVPM GSSVMTVSAH DEDTGRDGEI RYSIRDGSGV1080
 1081 GVFRIDEETG VIETSDRLDR ESTSHYWLTV YATDQGVVPL SSFIEVYIEV EDVNDNAPQT1140
 1141 SEPVYYPEIM ENSPKDVSVV QIEAFDPDSS SSDKLTYRIT SGNPQGFFSI HPKTGLITTT1200
 1201 SRKLDREQQD EHILEVTVTD NGVPPRSTIA RVIVKILDEN DNRPQFLQKF YKIRLPEREK1260
 1261 ADGDRSAKRE PLYRVIAADK DEGPNAELSY SIEEGNEHGR FSIEPKTGVV SSKKFSAAGE1320
 1321 YDILSIKAID NGRPQKSSTT RLHIEWISKP KPSLEPISFE ESVFSFTVME SDPVAHMIGV1380
 1381 ISVEPPGMPL WFDIIGGNYD SHFDVDKGTG TIIVAKPLDA EQKSSYNLTV EATDGTSTIL1440
 1441 TQVLIKVIDT NDHRPQFSTS KYEVSVPEDT EPETEILQIS AVDRDEKNKL IYTLQSSIDP1500
 1501 ASLKKFRLDP ATGALYTSEK LDHEAIHQHV LTVMVRDQDV PVKRNFARII VNVSDMNDHS1560
 1561 PWFTSSSYEG RVYESAAVGS VVLQVTALDR DKGRNAEVLY SIESGNIGNS FTIDPILGSI1620
 1621 KTARELDRSH QVDYDLMVKA TDKGEPPMSE MTSVRISVTV ADNASPKFTS KEYSAEISEA1680
 1681 IRIGSFVGMV SAHSQSSVMY EVKDGNIGDA FNINPHSGSI VTQRALDFET LPIYTLTVQG1740
 1741 TNMAGLSTNT TVVVHIQDEN DNPPAFTRAE YSGFISESAS VNSVVLTDKN VPLVIRATDA1800
 1801 DRESNALLVY QIVEPSVHNY FAIDPTTGAI HTVLSLDYEE TRVFHFTVQV HDMGTPRLFA1860
 1861 EYAANVTVHV IDINDCPPVF SKSLYEASLL LPTYKGVNVI TVNATDADSR AFSQLIYSIT1920
 1921 KGNIGEKFSM DHKTGTIAIQ NTTQLRSRYE LTVRASDGRF TSVASVRINV KESRESPLKF1980
 1981 TQDAYSAVVK ENSTEAKTLA VITAIGNPIN EPLFYRILNP DRRFKISHTS GVLSTTGIPF2040
 2041 DREQQETFVV VVEVTKEREP SAVAHVVVKV TVEDQNDNAP VFVNLPYYAV VKVDAEVGHV2100
 2101 IRHVTAIDRD SGRNGDVHYY LKEHHDHFEI GPSGDISLKK QFEHDTLNKE YLVTVVAKDG2160
 2161 GNPAFSAEVL VPITVMNKAM PVFEKAFYSA EIPENVQTHS PVVHVQANSP EGLKVFYSIT2220
 2221 DGDPFSQFTI NFNTGVINVI APLDFESHPA YKLSIRATDS LTGAHAEVFV DIVVEDINDN2280
 2281 PPVFVQQSYS TTLSEASVIG APILQVRATD SDSEPNRGIS YQLIGNHSKS HDHFHIDSHT2340
 2341 GLISLVRALD YEQFQQHKLL VRAVDGGMPP LSSDVVVTVD VTDLNDNPPL FEQQVYEARI2400
 2401 SEHAAHGHFV MCVKACDADR SDLDRLEYSI LSGNDHKSFV IDGETGIITL SNPRRHTLKP2460
 2461 FYSLNVSVSD GVFRSSARVN VTVMGGNLHS PVFHQNEYEV ELAENAPLHT LVVQVKATDR2520
 2521 DSGIYGHLTY HLVNDFAKDR FYVNDGGQVF TLERLDREAP AEKVISVRLM AKDAGGKVAF2580
 2581 CTVNVILTDD NDNAPQFRST KYEVNVGSSA AKGTSVVKVF ASDADEGSNA DVTYAIEADS2640
 2641 ESVEENLEIN QLTGLITTKE SLIGLENEFF TFFVRAVDNG SPPKESVVPV YVKILPPEVQ2700
 2701 LPRFSEPFYT YSISEDMPIG TEIDLIRVEH SGTVLYTLVK GNTPESNRDE FFVIDRQSGR2760
 2761 LKLEKSLDHE TTKWYQFSIL ARCTLDDYEV VASIDVSIQV KDANDNSPVL ESNPYEAFIV2820
 2821 ENLPAGSRVI QVRASDLDSG VNGQVMYSLD QSQDADIIES FAINMETGWI TTLKELDHEE2880
 2881 RASYQIKVVA SDHGEKVQLS STAIVDVTVT DVNDSPPRFT AEIYKGTVSE DDPPGGVIAI2940
 2941 LSTTDADSEE INRQVSYFIT GGDALGQFAV ENMQNDWRVY VKKPLDREQK DSYLLTVTAT3000
 3001 DGTFSSKARV EVKVLDANDN SPVCERTAYS DAIPEDALPG KLVMQVSATD ADIRSNAEIT3060
 3061 YTLFGSGAEK FKLNPDTGEL RTLALLDREE QAVYHLLVKA TDGGGRSCQA TIVLTLEDVN3120
 3121 DNTPEFTADP YAITVFENTE PGTPLTRVQA TDADAGLNRK ISYSLLDSAD GQFSINEQSG3180
 3181 ILQLEKHLDR ELQAVYTLTL KAADQGLPRK LTATGTVVVS VLDINDNPPV FEYREYGATV3240
 3241 SEDIVIGTEV LQVYAASRDI EANAEITYAI ISGNEHGKFS IDSKTGAIFI IENLDYESSH3300
 3301 GYYLTVEATD GGTPSLSDVA TVNINITDIN DNSPVFSQDS YTTVVSEDAA LEQPVITIMA3360
 3361 DDADGPSNSH ILYSIIEGNQ GSPFTIDPVR GEIKVTKPLD RETISGYTLT VQAADNGNPP3420
 3421 RVNTTTVNID VSDVNDNAPL FSRDNYSVII QENKPVGFSV LKLVVTDKDS SHNGPPFSFA3480
 3481 IVSGNDDNMF EVNQHGVLLT AATVKRKVKD HYLLHVKVAD NGKPQLSSLT HIDIRVIEES3540
 3541 IHPPAILPLE IFITASGEEY SGGVIGKIHA TDQDVYDTLT YSLDPHMDGL FSVSSTGGKL3600
 3601 IAHRKLDIGQ YLLNVSVTDG KFTTVADITV HIQQVTQEML NHTIAIRFAN LTPEEFVGDY3660
 3661 WRNFQRALRN ILGIRKNDIQ IVSLQPSEPH SHLDVLLFVE KSGGTQISTK QLLHKINSSV3720
 3721 TDIEEIIGVR ILDVFQKLCA GLDCPWKFCD EKVSVDENIM STHSTARLSF VTPRHHRTAV3780
 3781 CLCKDGTCPP VHQGCEDNPC PAGSECVADP REEKYSCVCP GGGFAKCPGS SSITFTGSSF3840
 3841 VKYRLMENEN RLEMKLTMRL RTYSSHAVVM YARGTDYSIL EIHTGRLQYK FDCGSGPGIV3900
 3901 SVQSIQVNDG QWHAVSLEVE GNYAKLVLDE VHTASGTAPG ALKTLNLDNY VIFGGHLRQQ3960
 3961 GTKHGRNTQV ANGFRGCMDS IYLNGQELPL NNKPRAYAHI EEWVDLAHGC LLTATEDCSS4020
 4021 NPCQNGGVCN PSPTGGYYCK CSALHAGTYC EVSVNPCSSN PCLYGGTCMV DNGGFVCQCR4080
 4081 GLYTGQRCQL SPYCKDEPCK NGGTCFDSLD GAVCQCDSGF RGERCQSDID ECAGNPCRNG4140
 4141 ALCENTHGSY HCNCSQEYRG KHCEDATPNH YVSTPWNIGL AEGIGIIVFI AGIFLLVVVF4200
 4201 VLCRKMISRK KKHQAEPEDK RLGPTTAFLQ RPYFDSKPSK NIYSDIPPQV PVRPISYTPS4260
 4261 IPSDSRNNLD RNSFEGSAIP EHPEFSTFNP ESMHGHRKAV AVCSVAPNLP PPPPSNSPSD4320
 4321 SDSIQKPSWD FDYDAKVVDL DPCLSKKPLE EKPSQPYSAR ESLSEVQSLS SFQSESCDDN4380
 4381 GYHWDTSDWM PSVPLPDIQE FPNYEVIDEH TPLYSADPNA IDTDYYPGGY DIESDFPPPP4440
 4441 EDFPAPDELP PLPPEFSDQF ESIHPPRDMP AAGSLGSSSR NRQRFNLNQY LPNFYPVDMS4500
 4501 EPQKQGAGEN STCREPYTPY PPGYQRNFEA PTIENMPMSV YTSTASCSDV SACCEVESEV4560
 4561 MMSDYESGDD GHFEEVTIPP LDSQQHTEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle