YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4545139
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPTLSQLDSN NCSFVFVDNL RKTLQLAVHI PTFLLGLVLN LLAIRGFGAF LKRRQLEYMA  60
   61 TSIYMINLAC FDLLLVLSLP FKMILPQVKS SPSLVFCTFV ECLYFISMYG SVFTICFISL 120
  121 DRLLAIQYPL LVNHFRSPRK TFGICCIIWM LVWVGSIPIY TFHRGVEGYK CFHNMSDSTW 180
  181 SARVFFPLEI FGFLLPMGIM GFCSYRSIHI LLSIQGDDQW VRKRACIIWT IATNLVVFVV 240
  241 SFLPVHLGLF LQFLVRNGFI LNCRVKQGIS LFLQLSLCFS NINCCLDVFC YYFAIK

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.94
Transmembrane Helix	26	48	0.86
Cytoplasmic	49	62	0.80
Transmembrane Helix	63	84	0.88
Non-Cytoplasmic	85	101	0.81
Transmembrane Helix	102	120	0.92
Cytoplasmic	121	140	0.84
Transmembrane Helix	141	162	0.92
Non-Cytoplasmic	163	184	0.92
Transmembrane Helix	185	205	0.92
Cytoplasmic	206	225	0.89
Transmembrane Helix	226	250	0.89
Non-Cytoplasmic	251	270	0.94
Transmembrane Helix	271	295	0.68
Cytoplasmic	296	296	0.78