YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21070944, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSEMNEGR LTYAELKLSL KSKDKPQPTQ KKREYPWRIS VVILGTVCLC LLISSIVFGY  60
   61 LFFQGTSKFK IQCEKDANKN AVSSMEVVDP SALPPTTGKG CYKCQGRWFC CGEKCYYFSE 120
  121 EEKTWDESEA SCRLLGSHLA KIDNREEQNF IQSRLNYSYW VGLRKKGGQF LWVHQEDEKI 180
  181 SSDLDFHMTT HLADAACGYI KPKLLNNAQC SRLFPYICKK NFTCLLTSEN W

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	62	0.94
Non-Cytoplasmic	63	231	0.98