YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21389329, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKVAVIGA GVSGLSSIKC CLDENLEPTC FERSSDFGGL WKFATTVRSV TKRPDFSETG  60
   61 QWEVVTETEG KQDRAVFDAV MVCTGQFLSP RLPLESFPGI HKFKGQILHS QEYRIPDAFR 120
  121 GKRILVVGLG NTGGDVAVEL SGIAAQVFLS TRTGAWVRSR SSVGGYPLNM MQTRWRNFLA 180
  181 RVLPSRFVSW NQERQMNKIF NHENYGLSIA KGKKPKFIVN DELPTCILCG KITMKTSVKD 240
  241 FTESSIVFED GTIEANIDVV IFTTGYEFSF PFFEEPLKSL CTKKVILYKR VFPPNLERST 300
  301 LAIIGLISLT GSILVGTEFQ ARWATRVFKG LCNIPPSQKL MAEAIKKEEL IKRGVIKDTS 360
  361 QDKLDFISYM DELTQCIGAK PNIPLLFLKD PRLAWEVFFG PCTPYQYRLM GPGRWDGARN 420
  421 AILTQWDRTV KPLKTRTVPK SQEPASLSRY LKTWGAPVLI VSLLLIYKSS LFLELVQSKL 480
  481 QGRFSPSRIL WYIPQNS

Type	Start	End	Confidence
Signal Peptide	1	20	0.83
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	299	0.99
Transmembrane Helix	300	319	0.64
Cytoplasmic	320	449	0.67
Transmembrane Helix	450	471	0.60
Non-Cytoplasmic	472	497	0.70