YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3242460, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.95
Transmembrane Helix	36	56	0.93
Cytoplasmic	57	73	0.83
Transmembrane Helix	74	94	0.84
Non-Cytoplasmic	95	103	0.75
Transmembrane Helix	104	123	0.96
Cytoplasmic	124	133	0.81
Transmembrane Helix	134	152	0.94
Non-Cytoplasmic	153	170	0.82
Transmembrane Helix	171	190	0.93
Cytoplasmic	191	300	0.98
Transmembrane Helix	301	320	0.80
Non-Cytoplasmic	321	344	0.76
Transmembrane Helix	345	366	0.88
Cytoplasmic	367	424	0.82
Transmembrane Helix	425	444	0.84
Non-Cytoplasmic	445	450	0.62
Transmembrane Helix	451	470	0.89
Cytoplasmic	471	531	0.88
Transmembrane Helix	532	554	0.78
Non-Cytoplasmic	555	570	0.65
Transmembrane Helix	571	585	0.46
Cytoplasmic	586	961	0.77
Transmembrane Helix	962	982	0.70
Non-Cytoplasmic	983	1010	0.84
Transmembrane Helix	1011	1034	0.84
Cytoplasmic	1035	1072	0.87
Transmembrane Helix	1073	1092	0.63
Non-Cytoplasmic	1093	1096	0.47
Transmembrane Helix	1097	1121	0.85
Cytoplasmic	1122	1189	0.60
Transmembrane Helix	1190	1213	0.82
Non-Cytoplasmic	1214	1523	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLCGSGEL GSKFWDSNLT VYTNTPDLTP CFQNSLLAWV PCIYLWAALP CYLFYLRHHR  60
   61 LGYIVLSCLS RLKTALGVLL WCISWVDLFY SFHGLVHGSS PAPVFFITPL LVGITMLLAT 120
  121 LLIQYERLRG VRSSGVLIIF WLLCVICAII PFRSKILLAL AEGKILDPFR FTTFYIYFAL 180
  181 VLCAFILSCF QEKPPLFSPE NLDTNPCPEA SAGFFSRLSF WWFTKLAILG YRRPLEDSDL 240
  241 WSLSEEDCSH KVVQRLLEAW QKQQTQASGP QTAALEPKIA GEDEVLLKAR PKTKKPSFLR 300
  301 ALVRTFTSSL LMGACFKLIQ DLLSFINPQL LSILIRFISD PTAPTWWGFL LAGLMFVSST 360
  361 MQTLILHQHY HCIFVMALRI RTAIIGVIYR KALTITNSVK REYTVGEMVN LMSVDAQRFM 420
  421 DVSPFINLLW SAPLQVILAI YFLWQILGPS ALAGVAVIVL LIPLNGAVSM KMKTYQVQQM 480
  481 KFKDSRIKLM SEILNGIKVL KLYAWEPTFL EQVEGIRQGE LQLLRKGAYL QAISTFIWVC 540
  541 TPFMVTLITL GVYVCVDKNN VLDAEKAFVS LSLFNILKIP LNLLPQLISG MTQTSVSLKR 600
  601 IQDFLNQDEL DPQCVERKTI SPGRAITIHN GTFSWSKDLP PTLHSLNIQI PKGALVAVVG 660
  661 PVGCGKSSLV SALLGEMEKL EGAVSVKGSV AYVPQQAWIQ NCTLQENVLF GQPMNPKRYQ 720
  721 QALETCALLA DLDVLPGGDQ TEIGEKGINL SGGQRQRVSL ARAVYSDANI FLLDDPLSAV 780
  781 DSHVAKHIFD QVIGPEGVLA GKTRVLVTHG ISFLPQTDFI IVLADGQITE MGHYSELLQH 840
  841 DGSFANFLRN YAPDENQEAN EGVLQHANEE VLLLEDTLST HTDLTDTEPA IYEVRKQFMR 900
  901 EMSSLSSEGE GQNRPVLKRY TSSLEKEVPA TQTKETGALI KEEIAETGNV KLSVYWDYAK 960
  961 SVGLCTTLFI CLLYAGQNAV AIGANVWLSA WTNDVEEHGQ QNNTSVRLGV YATLGILQGL1020
 1021 LVMLSAFTMV VGAIQAARLL HTALLHNQIR APQSFFDTTP SGRILNRFSK DIYVIDEVLA1080
 1081 PTILMLFNSF YTSISTIVVI VASTPLFCVV VLPLAVFYGF VQRFYVATSR QLKRLESVSR1140
 1141 SPIFSHFSET VTGTSVIRAY GRVQDFKVLS DAKVDSNQKT TYPYIASNRW LGVHVEFVGN1200
 1201 CVVLFSALFA VIGRNSLNPG LVGLSVSYAL QVTLSLNWMI RTLSDLESNI IAVERVKEYS1260
 1261 KTETEAPWVL ESNRAPEGWP RSGVVEFRNY SVRYRPGLEL VLKNLTLHVQ GGEKVGIVGR1320
 1321 TGAGKSSMTL CLFRILEAAE GEIFIDGLNV AHIGLHDLRS QLTIIPQDPI LFSGTLRMNL1380
 1381 DPFGRYSDED IWRTLELSHL SAFVSSQPTG LDFQCSEGGD NLSVGQRQLV CLARALLRKS1440
 1441 RVLVLDEATA AIDLETDDLI QGTIRTQFED CTVLTIAHRL NTIMDYNRVL VLDKGVVAEF1500
 1501 DSPVNLIAAG GIFYGMAKDA GLA