YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR105_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAAEGILL SIATVEAGLG VLGNTFIALV NCMDWAKNKK LSKIGFLLFG LATSRIFIVW  60
   61 ILILDAYAKL FFPGKYLSKS LTEIISCIWM TVNHMTVWFA TSLSIFYFLK IANFSHYIFL 120
  121 WLKRRTDKVF AFLLWCLLIS WAISFSFTVK VMKSNPKNHG NRTSGTHWEK REFTSNYVLI 180
  181 NIGVISLLIM TLTACFLLII SLWKHSRQMQ SNVSGFRDLN TEAHVKAIKF LISFIILFIL 240
  241 YFIGVAVEII CMFIPENKLL FIFGLTTASV YPCCHSVILI LTNSQLKQAF VKVLEGLKFS 300
  301 ENGKDLRAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	30	0.84
Cytoplasmic	31	43	0.82
Transmembrane Helix	44	64	0.95
Non-Cytoplasmic	65	94	0.86
Transmembrane Helix	95	114	0.83
Cytoplasmic	115	128	0.76
Transmembrane Helix	129	149	0.93
Non-Cytoplasmic	150	177	0.94
Transmembrane Helix	178	202	0.87
Cytoplasmic	203	229	0.91
Transmembrane Helix	230	252	0.89
Non-Cytoplasmic	253	259	0.81
Transmembrane Helix	260	282	0.88
Cytoplasmic	283	309	0.94