YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZDHC2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSGPGGVR RRCRRVLYWI PVVFISLLLG WSYYAYAIQL CIVSMENIGE QVVCLMAYHL  60
   61 LFAMFVWSYW KTIFTLPMNP SKEFHLSYAE KELLEREPRG EAHQEVLRRA AKDLPIYTRT 120
  121 MSGAIRYCDR CRLIKPDRCH HCSVCDKCIL KMDHHCPWVN NCVGFSNYKF FLLFLAYSLL 180
  181 YCLFIAATDL QYFIRFWTNG LPDTQAKFHI MFLFFAAAMF SVSLSSLFGY HCWLVSKNKS 240
  241 TLEAFRNPVF RHGTDKNGFS LGFSKNMRQV FGDEKKYWLL PIFSSQGDGC SFPTCLVNQD 300
  301 PEQPSTPAGL NSTAKNPENH QFPAKPLRES QSHLLTDSQT WTENSSNSGR CKAGMSNPAL 360
  361 TMENET

Type	Start	End	Confidence
Cytoplasmic	1	15	0.98
Transmembrane Helix	16	37	0.93
Non-Cytoplasmic	38	51	0.84
Transmembrane Helix	52	70	0.90
Cytoplasmic	71	169	0.97
Transmembrane Helix	170	190	0.90
Non-Cytoplasmic	191	209	0.86
Transmembrane Helix	210	234	0.88
Cytoplasmic	235	366	0.99