YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CADM3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPSALPLL LLLACSWAPG GANLSQDDSQ PWTSDETVVA GGTVVLKCQV KDHEDSSLQW  60
   61 SNPAQQTLYF GEKRALRDNR IQLVSSTPHE LSISISNVAL ADEGEYTCSI FTMPVRTAKS 120
  121 LVTVLGIPQK PIITGYKSSL REKETATLNC QSSGSKPAAQ LAWRKGDQEL HGDQTRIQED 180
  181 PNGKTFTVSS SVSFQVTRDD DGANVVCSVN HESLKGADRS TSQRIEVLYT PTAMIRPEPA 240
  241 HPREGQKLLL HCEGRGNPVP QQYVWVKEGS EPPLKMTQES ALIFPFLNKS DSGTYGCTAT 300
  301 SNMGSYTAYF TLNVNDPSPV PSSSSTYHAI IGGIVAFIVF LLLILLIFLG HYLIRHKGTY 360
  361 LTHEAKGSDD APDADTAIIN AEGGQSGGDD KKEYFI

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	326	0.99
Transmembrane Helix	327	349	0.94
Cytoplasmic	350	396	0.96