YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S1PR5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGLLRPAP VSEVIVLHYN YTGKLRGARY QPGAGLRADA AVCLAVCAFI VLENLAVLLV  60
   61 LGRHPRFHAP MFLLLGSLTL SDLLAGAAYA TNILLSGPLT LRLSPALWFA REGGVFVALA 120
  121 ASVLSLLAIA LERHLTMARR GPAPAASRAR TLAMAVAAWG LSLLLGLLPA LGWNCLGRLE 180
  181 ACSTVLPLYA KAYVLFCVLA FLGILAAICA LYARIYCQVR ANARRLRAGP GSRRATSSSR 240
  241 SRHTPRSLAL LRTLSVVLLA FVACWGPLFL LLLLDVACPA RACPVLLQAD PFLGLAMANS 300
  301 LLNPIIYTFT NRDLRHALLR LLCCGRGPCN QDSSNSLQRS PSAVGPSGGG LRRCLPPTLD 360
  361 RSSSPSEHSC PQRDGMDTSC STGSPGAATA NRTLVPDATD

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.86
Transmembrane Helix	40	61	0.86
Cytoplasmic	62	70	0.83
Transmembrane Helix	71	91	0.92
Non-Cytoplasmic	92	108	0.86
Transmembrane Helix	109	131	0.88
Cytoplasmic	132	150	0.90
Transmembrane Helix	151	173	0.90
Non-Cytoplasmic	174	191	0.94
Transmembrane Helix	192	216	0.92
Cytoplasmic	217	247	0.98
Transmembrane Helix	248	271	0.90
Non-Cytoplasmic	272	290	0.83
Transmembrane Helix	291	310	0.85
Cytoplasmic	311	400	0.91