YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPNGTAPSP TSSPSSSPGG CGEGVCSRGP GSGAADGMEE PGRNSSQNGT LSEGQGSAIL  60
   61 ISFIYSVVCL VGLCGNSMVI YVILRYAKMK TATNIYILNL AIADELLMLS VPFLVTSTLL 120
  121 RHWPFGALLC RLVLSVDAVN MFTSIYCLTV LSVDRYVAVV HPIKAARYRR PTVAKVVNLG 180
  181 VWVLSLLVIL PIVVFSRTAA NSDGTVACNM LMPEPAQRWL VGFVLYTFLM GFLLPVGAIC 240
  241 LCYVLIIAKM RMVALKAGWQ QRKRSERKIT LMVMMVVMVF VICWMPFYVV QLVNVFAEQD 300
  301 DATVSQLSVI LGYANSCANP ILYGFLSDNF KRSFQRILCL SWMDNAAEEP VDYYATALKS 360
  361 RAYSVEDFQP ENLESGGVFR NGTCASRIST L

Type	Start	End	Confidence
Non-Cytoplasmic	1	60	0.91
Transmembrane Helix	61	84	0.90
Cytoplasmic	85	94	0.86
Transmembrane Helix	95	116	0.87
Non-Cytoplasmic	117	132	0.70
Transmembrane Helix	133	158	0.71
Cytoplasmic	159	175	0.86
Transmembrane Helix	176	195	0.94
Non-Cytoplasmic	196	224	0.88
Transmembrane Helix	225	247	0.95
Cytoplasmic	248	268	0.93
Transmembrane Helix	269	290	0.94
Non-Cytoplasmic	291	306	0.89
Transmembrane Helix	307	326	0.77
Cytoplasmic	327	391	0.80