YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SRPRB_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASANTRRVG DGAGGAFQPY LDSLRQELQQ RDPTLLSVAV AVLAVLLTLV FWKFIWSRKS  60
   61 SQRAVLFVGL CDSGKTLLFV RLLTGQYRDT QTSITDSSAI YKVNNNRGNS LTLIDLPGHE 120
  121 SLRLQFLDRF KSSARAVVFV VDSATFQREV KDVAEFLYQV LIDSMALKNT PAFLVACNKQ 180
  181 DIAMAKSAKL IQQQLEKELN TLRVTRSAAP STLDSSSTAP AQLGKKGKEF EFSQLPLKVE 240
  241 FLECSAKGGR GDAGSADVQD LEKWLAKIA

Type	Start	End	Confidence
Cytoplasmic	1	33	0.75
Transmembrane Helix	34	56	0.93
Non-Cytoplasmic	57	269	0.78