YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA2BR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLETQDALY VALELVIAAL AVAGNVLVCA AVGASSALQT PTNYFLVSLA TADVAVGLFA  60
   61 IPFAITISLG FCTDFHSCLF LACFVLVLTQ SSIFSLLAVA VDRYLAIRVP LRYKGLVTGT 120
  121 RARGIIAVLW VLAFGIGLTP FLGWNSKDRA TSNCTEPGDG ITNKSCCPVK CLFENVVPMS 180
  181 YMVYFNFFGC VLPPLLIMMV IYIKIFMVAC KQLQHMELME HSRTTLQREI HAAKSLAMIV 240
  241 GIFALCWLPV HAINCITLFH PALAKDKPKW VMNVAILLSH ANSVVNPIVY AYRNRDFRYS 300
  301 FHRIISRYVL CQTDTKGGSG QAGGQSTFSL SL

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.78
Transmembrane Helix	15	34	0.92
Cytoplasmic	35	44	0.73
Transmembrane Helix	45	67	0.89
Non-Cytoplasmic	68	77	0.75
Transmembrane Helix	78	101	0.91
Cytoplasmic	102	121	0.86
Transmembrane Helix	122	142	0.91
Non-Cytoplasmic	143	182	0.96
Transmembrane Helix	183	206	0.88
Cytoplasmic	207	231	0.90
Transmembrane Helix	232	253	0.86
Non-Cytoplasmic	254	270	0.80
Transmembrane Helix	271	292	0.71
Cytoplasmic	293	332	0.77