YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP2DA_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLNGTGLW PMAIFTVIFI LLVDLMHRHQ RWTSRYPPGP VPWPVLGNLL QVDPSNMPYS  60
   61 MYKLQHRYGD VFSLQMGWKP MVIVNRLKAV QEVLVTHGED TADRPPVPIF KCLGVKPRSQ 120
  121 GVVFASYGPE WREQRRFSVS TLRTFGMGKK SLEEWVTKEA GHLCDAFTAQ NGRSINPKAM 180
  181 LNKALCNVIA SLIFARRFEY EDPYLIRMLT LVEESLIEVS GFIPEVLNTF PALLRIPGLA 240
  241 DKVFQGQKTF MAFLDNLLAE NRTTWDPAQP PRNLTDAFLA EVEKAKGNPE SSFNDENLRM 300
  301 VVVDLFTAGM VTTATTLTWA LLLMILYPDV QRRVQQEIDE VIGQVRCPEM TDQAHMPYTN 360
  361 AVIHEVQRFG DIAPLNLPRI TSCDIEVQDF VIPKGTTLII NLSSVLKDET VWEKPLRFHP 420
  421 EHFLDAQGNF VKHEAFMPFS AGRRACLGEP LARMELFLFF TCLLQHFSFS VPAGQPRPST 480
  481 LGNFAISVAP LPYQLCAAVR EQGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.75
Transmembrane Helix	7	26	0.94
Cytoplasmic	27	304	0.74
Transmembrane Helix	305	327	0.79
Non-Cytoplasmic	328	504	0.72