YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PACA_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMCSGARLA LLVYGIIMHN SVSCSPAAGL SFPGIRPEEE AYDQDGNPLQ DFYDWDPPGA  60
   61 GSPASALRDA YALYYPADRR DVAHEILNEA YRKVLDQLSA RKYLQSMVAR GMGENLAAAA 120
  121 VDDRAPLTKR HSDGIFTDSY SRYRKQMAVK KYLAAVLGKR YKQRVKNKGR RIAYL

Type	Start	End	Confidence
Signal Peptide	1	24	0.81
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	175	0.98