YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109502680, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.70
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	148	0.99
Transmembrane Helix	149	171	0.92
Cytoplasmic	172	181	0.81
Transmembrane Helix	182	203	0.92
Non-Cytoplasmic	204	214	0.90
Transmembrane Helix	215	232	0.91
Cytoplasmic	233	392	0.79
Transmembrane Helix	393	414	0.90
Non-Cytoplasmic	415	419	0.47
Transmembrane Helix	420	440	0.87
Cytoplasmic	441	455	0.57
Transmembrane Helix	456	481	0.81
Non-Cytoplasmic	482	487	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLHPAFPS YLLLVLFGIW RTVPQIHASS TGLLPLSATS FLEELMKRYG ENDSLTLPQL  60
   61 KTLLNSVGVG RDNVSLPKEA HRNLSTCFSS GDLFAAHNFS ERSRIGKSEF QEFCPTILQQ 120
  121 LDSRACTPEN QENKENEQTE EGKPSAIEVW GFGFLSVSLI NLASLLGVLV LPCTEKAFFS 180
  181 RVLTYFIALS IGTLLSNALF QLIPEAFGFN PQDNYVSKSA VVFGGFYLFF FTEKILKMLL 240
  241 KQKNEHHHGH NHFTSETLPS KKDQEEGVTE KLQNGDLDHM IPQHCNNDLD GKAPSTDEKV 300
  301 IVGSMSVQDL QASQSACYWL KGVRYSDIGT LAWMITLSDG LHNFIDGLAI GASFTVSVFQ 360
  361 GISTSVAILC EEFPHELGDF VILLNAGMSI QQALFFNFLS ACCCYVGLAF GILAGSHFSA 420
  421 NWIFALAGGM FLYIALADMF PEMNEVCQED EKKDSFLVPF VIQNLGLLTG FSIMLVLTMY 480
  481 SGQIQIG