YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKVNNFPP LPKFIPLKPC FYQDFEADIP PQHLSLTKRL YYLWMLNSVT LAVNLVGCLA  60
   61 WLIGGGGATN FGLAFLWLIL FTPCSYVCWF RPIYKAFKTD SSFSFMAFFF TFMAQLVISI 120
  121 IQAVGIPGWG VCGWIATISF FGTNIGSAVV MLIPTVMFTV VAVFSFIALS MVHKFYRGSG 180
  181 GSFSKAQEEW TTGAWKNPHV QQAAQNAAMG AAQGAMNQPQ TQYSTTPNYT YSNEM

Type	Start	End	Confidence
Cytoplasmic	1	40	0.99
Transmembrane Helix	41	63	0.94
Non-Cytoplasmic	64	70	0.80
Transmembrane Helix	71	90	0.94
Cytoplasmic	91	104	0.79
Transmembrane Helix	105	126	0.91
Non-Cytoplasmic	127	146	0.75
Transmembrane Helix	147	169	0.90
Cytoplasmic	170	235	0.94