YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S36A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.79
Transmembrane Helix	57	76	0.72
Non-Cytoplasmic	77	81	0.73
Transmembrane Helix	82	104	0.89
Cytoplasmic	105	146	0.94
Transmembrane Helix	147	167	0.95
Non-Cytoplasmic	168	199	0.93
Transmembrane Helix	200	216	0.93
Cytoplasmic	217	223	0.69
Transmembrane Helix	224	245	0.91
Non-Cytoplasmic	246	262	0.89
Transmembrane Helix	263	283	0.93
Cytoplasmic	284	294	0.86
Transmembrane Helix	295	317	0.89
Non-Cytoplasmic	318	339	0.92
Transmembrane Helix	340	360	0.80
Cytoplasmic	361	380	0.71
Transmembrane Helix	381	398	0.92
Non-Cytoplasmic	399	404	0.60
Transmembrane Helix	405	429	0.72
Cytoplasmic	430	442	0.61
Transmembrane Helix	443	461	0.91
Non-Cytoplasmic	462	481	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTKSAGSP QVAATVKLDL VSFPESAKKV QSQDPNPVNG SSSESSEKTK GITGFQTLVH  60
   61 LVKGNMGTGI LGLPLAVKNA GILMGPLSLL VMGLIACHCM HILVRCAQRF CHRLNKPFMD 120
  121 YGDTVMHGLA SSPNTWLQSH AHWGRHAVSF FLIVTQLGFC CVYIVFLADN LKQVVEAVNS 180
  181 TTISCHKNET VVLTPTIDSR LYMLAFLPVL GLLVFIRNLR VLTIFSLLAN VSMLVSLVII 240
  241 GQYIIQGIPD PSQLPLVASW KTYPLFFGTA IFSFESIGVV LPLENKMKDA RRFPTILSLG 300
  301 MSIITTLYIA IGALGYLRFG DDIKASITLN LPNCWLYQSV KLLYVVGILC THALQFYVPA 360
  361 EIIIPLAVSQ VSKRWALPVD LSIRLALVCV TCMLAILIPR LDLVLSLVGS VSSSALALII 420
  421 PPLLEVTTYY GEGMSPLTIT KDALISILGF MGFVVGTYQA LDELIRSGNS LPLSNSTMFI 480
  481 Q