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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCNNG_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGEKIKAK IKKNLPVRGP QAPTIKDLMH WYCMNTNTHG CRRIVVSRGR LRRLLWIAFT  60
   61 LTAVALIIWQ CALLVFSFYT VSVSIKVHFQ KLDFPAVTIC NINPYKYSAV SDLLTDLDSE 120
  121 TKQALLSLYG VKESRKRREA GSMPSTLEGT PPRFFKLIPL LVFNENEKGK ARDFFTGRKR 180
  181 KISGKIIHKA SNVMHVHESK KLVGFQLCSN DTSDCATYTF SSGINAIQEW YKLHYMNIMA 240
  241 QVPLEKKINM SYSAEELLVT CFFDGMSCDA RNFTLFHHPM YGNCYTFNNK ENATILSTSM 300
  301 GGSEYGLQVI LYINEDEYNP FLVSSTGAKV LIHQQNEYPF IEDVGMEIET AMSTSIGMHL 360
  361 TESFKLSEPY SQCTEDGSDV PVTNIYNAAY SLQICLYSCF QTKMVEKCGC AQYSQPLPPA 420
  421 ANYCNYQQHP NWMYCYYQLY QAFVREELGC QSVCKQSCSF KEWTLTTSLA QWPSEASEKW 480
  481 LLNVLTWDQS QQINKKLNKT DLAKLLIFYK DLNQRSIMES PANSIEMLLS NFGGQLGLWM 540
  541 SCSVVCVIEI IEVFFIDFFS IIARRQWHKA KDWWARRQTP PSTETPSSRQ GQDNPALDTD 600
  601 DDLPTFTSAM RLPPAPGSTV PGTPPPRYNT LRLDRAFSSQ LTDTQLTNEL 

YRC Informatics Platform - Version 3.0
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