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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCNNB_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKKYLLKC LHRLQKGPGY TYKELLVWYC NNTNTHGPKR IICEGPKKKA MWFLLTLLFA  60
   61 CLVCWQWGVF IQTYLSWEVS VSLSMGFKTM NFPAVTVCNS SPFQYSKVKH LLKDLYKLME 120
  121 AVLDKILAPK SSHTNTTSTL NFTIWNHTPL VLIDERNPDH PVVLNLFGDS HNSSNPAPGS 180
  181 TCNAQGCKVA MRLCSANGTV CTFRNFTSAT QAVTEWYILQ ATNIFSQVLP QDLVGMGYAP 240
  241 DRIILACLFG TEPCSHRNFT PIFYPDYGNC YIFNWGMTEK ALPSANPGTE FGLKLILDIG 300
  301 QEDYVPFLAS TAGARLMLHE QRTYPFIREE GIYAMAGTET SIGVLLDKLQ GKGEPYSPCT 360
  361 MNGSDVAIQN LYSDYNTTYS IQACLHSCFQ DHMIHNCSCG HYLYPLPAGE KYCNNRDFPD 420
  421 WAYCYLSLQM SVVQRETCLS MCKESCNDTQ YKMTISMADW PSEASEDWIL HVLSQERDQS 480
  481 SNITLSRKGI VKLNIYFQEF NYRTIEESPA NNIVWLLSNL GGQFGFWMGG SVLCLIEFGE 540
  541 IIIDFIWITV IKLVASCKGL RRRRPQAPYT GPPPTVAELV EAHTNFGFQP DTTSCRPNAE 600
  601 VYPDQQTLPI PGTPPPNYDS LRLQPLDTME SDSEVEAI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle