YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLNSSVPQG TPGEPDAQPF SGPQSEMEAT FLALSLSNGS GNTSESDTAG PNSDLDVNTD  60
   61 IYSKVLVTAI YLALFVVGTV GNSVTAFTLA RKKSLQSLQS TVHYHLGSLA LSDLLILLLA 120
  121 MPVELYNFIW VHHPWAFGDA GCRGYYFLRD ACTYATALNV ASLSVERYLA ICHPFKAKTL 180
  181 MSRSRTKKFI SAIWLASALL AIPMLFTMGL QNRSGDGTHP GGLVCTPIVD TATVKVVIQV 240
  241 NTFMSFLFPM LVISILNTVI ANKLTVMVHQ AAEQGRVCTV GTHNGLEHST FNMTIEPGRV 300
  301 QALRHGVLVL RAVVIAFVVC WLPYHVRRLM FCYISDEQWT TFLFDFYHYF YMLTNALFYV 360
  361 SSAINPILYN LVSANFRQVF LSTLACLCPG WRHRRKKRPT FSRKPNSMSS NHAFSTSATR 420
  421 ETLY

Type	Start	End	Confidence
Non-Cytoplasmic	1	66	0.77
Transmembrane Helix	67	89	0.85
Cytoplasmic	90	101	0.78
Transmembrane Helix	102	126	0.80
Non-Cytoplasmic	127	150	0.67
Transmembrane Helix	151	170	0.71
Cytoplasmic	171	189	0.91
Transmembrane Helix	190	210	0.94
Non-Cytoplasmic	211	241	0.86
Transmembrane Helix	242	261	0.85
Cytoplasmic	262	306	0.82
Transmembrane Helix	307	325	0.95
Non-Cytoplasmic	326	347	0.81
Transmembrane Helix	348	369	0.79
Cytoplasmic	370	424	0.80