YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLRB_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSLAVSFF ILMSLLFEDA CSKEKSSKKG KGKKKQYLCP SQQSAEDLAR VPPNSTSNIL  60
   61 NRLLVSYDPR IRPNFKGIPV DVVVNIFINS FGSIQETTMD YRVNIFLRQK WNDPRLKLPS 120
  121 DFRGSDALTV DPTMYKCLWK PDLFFANEKS ANFHDVTQEN ILLFIFRDGD VLVSMRLSIT 180
  181 LSCPLDLTLF PMDTQRCKMQ LESFGYTTDD LRFIWQSGDP VQLEKIALPQ FDIKKEDIEY 240
  241 GNCTKYYKGT GYYTCVEVIF TLRRQVGFYM MGVYAPTLLI VVLSWLSFWI NPDASAARVP 300
  301 LGIFSVLSLA SECTTLAAEL PKVSYVKALD VWLIACLLFG FASLVEYAVV QVMLNNPKRV 360
  361 EAEKARIAKA EQADGKGGNA AKKNTVNGTG TPVHISTLQV GETRCKKVCT SKSDLRSNDF 420
  421 SIVGSLPRDF ELSNYDCYGK PIEVNNGLGK PQAKNKKPPP AKPVIPTAAK RIDLYARALF 480
  481 PFCFLFFNVI YWSIYL

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	266	0.99
Transmembrane Helix	267	289	0.93
Cytoplasmic	290	298	0.83
Transmembrane Helix	299	318	0.93
Non-Cytoplasmic	319	330	0.73
Transmembrane Helix	331	350	0.95
Cytoplasmic	351	473	0.98
Transmembrane Helix	474	495	0.90
Non-Cytoplasmic	496	496	0.98