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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HCN3_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEARPAVG DGEAATPARE TPPAAPAQAR AASGGVPESA PEPKRRQLGT LLQPTVNKFS  60
   61 LRVFGSHKAV EIEQERVKSA GAWIIHPYSD FRFYWDLIML LLMVGNLIVL PVGITFFKEE 120
  121 NSPPWIVFNV LSDTFFLLDL VLNFRTGIVV EEGAEILLAP RAIRTRYLRT WFLVDLISSI 180
  181 PVDYIFLVVE LEPRLDAEVY KTARALRIVR FTKILSLLRL LRLSRLIRYM HQWEEIFHMT 240
  241 YDLASAVVRI FNLIGMMLLL CHWDGCLQFL VPMLQDFPSD CWVSMNRMVN HSWGRQYSHA 300
  301 LFKAMSHMLC IGYGQQAPVG MPDVWLTMLS MIVGATCYAM FIGHATALIQ SLDSSRRQYQ 360
  361 EKYKQVEQYM SFHKLPADTR QRIHEYYEHR YQGKMFDEES ILGELSEPLR EEIINFTCRG 420
  421 LVAHMPLFAH ADPSFVTAVL TKLRFEVFQP GDLVVREGSV GRKMYFIQHG LLSVLARGAR 480
  481 DTRLTDGSYF GEICLLTRGR RTASVRADTY CRLYSLSVDH FNAVLEEFPM MRRAFETVAM 540
  541 DRLRRIGKKN SILQRKRSEP SPGSSSGGVM EQHLVQHDRD MARGIRGLAP GTGARLSGKP 600
  601 VLWEPLVHAP LQAAAVTSNV AIALTHQRGP LPLSPDSPAT LLARSARRSA GSPASPLVPV 660
  661 RAGPLLARGP WASTSRLPAP PARTLHASLS RTGRSQVSLL GPPPGGGGRR LGPRGRPLSA 720
  721 SQPSLPQRAT GDGSPRRKGS GSERLPPSGL LAKPPGTVQP SRSSVPEPVT PRGPQISANM 780
  781 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle