YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HCN4_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLPPSMRK RLYSLPQQVG AKAWIMDEEE DGEEEGAGGL QDPSRRSIRL RPLPSPSPSV  60
   61 AAGCSESRGA ALGAADSEGP GRSAGKSSTN GDCRRFRGSL ASLGSRGGGS GGAGGGSSLG 120
  121 HLHDSAEERR LIAAEGDASP GEDRTPPGLA TEPERPGAAA QPAASPPPQQ PPQPASASCE 180
  181 QPSADTAIKV EGGAAASDQI LPEAEVRLGQ SGFMQRQFGA MLQPGVNKFS LRMFGSQKAV 240
  241 EREQERVKSA GFWIIHPYSD FRFYWDLTML LLMVGNLIII PVGITFFKDE NTTPWIVFNV 300
  301 VSDTFFLIDL VLNFRTGIVV EDNTEIILDP QRIKMKYLKS WFVVDFISSI PVDYIFLIVE 360
  361 TRIDSEVYKT ARALRIVRFT KILSLLRLLR LSRLIRYIHQ WEEIFHMTYD LASAVVRIVN 420
  421 LIGMMLLLCH WDGCLQFLVP MLQDFPHDCW VSINGMVNNS WGKQYSYALF KAMSHMLCIG 480
  481 YGRQAPVGMS DVWLTMLSMI VGATCYAMFI GHATALIQSL DSSRRQYQEK YKQVEQYMSF 540
  541 HKLPPDTRQR IHDYYEHRYQ GKMFDEESIL GELSEPLREE IINFNCRKLV ASMPLFANAD 600
  601 PNFVTSMLTK LRFEVFQPGD YIIREGTIGK KMYFIQHGVV SVLTKGNKET KLADGSYFGE 660
  661 ICLLTRGRRT ASVRADTYCR LYSLSVDNFN EVLEEYPMMR RAFETVALDR LDRIGKKNSI 720
  721 LLHKVQHDLN SGVFNYQENE IIQQIVRHDR EMAHCAHRVQ AAASATPTPT PVIWTPLIQA 780
  781 PLQAAAATTS VAIALTHHPR LPAAIFRPPP GPGLGNLGAG QTPRHPRRLQ SLIPSALGSA 840
  841 SPASSPSQVD TPSSSSFHIQ QLAGFSAPPG LSPLLPSSSS SPPPGACSSP PAPTPSTSTA 900
  901 ATTTGFGHFH KALGGSLSSS DSPLLTPLQP GARSPQAAQP PPPLPGARGG LGLLEHFLPP 960
  961 PPSSRSPSSS PGQLGQPPGE LSPGLAAGPP STPETPPRPE RPSFMAGASG GASPVAFTPR1020
 1021 GGLSPPGHSP GPPRTFPSAP PRASGSHGSL LLPPASSPPP PQVPQRRGTP PLTPGRLTQD1080
 1081 LKLISASQPA LPQDGAQTLR RASPHSSGES MAAFSLYPRA GGGSGSSGGL GPPGRPYGAI1140
 1141 PGQHVTLPRK TSSGSLPPPL SLFGARAASS GGPPLTAAPQ REPGARSEPV RSKLPSNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle