YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	V2R_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.65
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.64
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	40	0.94
Transmembrane Helix	41	63	0.90
Cytoplasmic	64	75	0.80
Transmembrane Helix	76	95	0.92
Non-Cytoplasmic	96	114	0.91
Transmembrane Helix	115	135	0.88
Cytoplasmic	136	155	0.89
Transmembrane Helix	156	178	0.89
Non-Cytoplasmic	179	205	0.93
Transmembrane Helix	206	229	0.91
Cytoplasmic	230	272	0.95
Transmembrane Helix	273	295	0.89
Non-Cytoplasmic	296	306	0.86
Transmembrane Helix	307	327	0.87
Cytoplasmic	328	371	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVSTVSAV PGLFSPPSSP SNSSQEELLD DRDPLLVRAE LALLSTIFVA VALSNGLVLG  60
   61 ALIRRGRRGR WAPMHVFISH LCLADLAVAL FQVLPQLAWD ATDRFHGPDA LCRAVKYLQM 120
  121 VGMYASSYMI LAMTLDRHRA ICRPMLAYRH GGGARWNRPV LVAWAFSLLL SLPQLFIFAQ 180
  181 RDVGNGSGVF DCWARFAEPW GLRAYVTWIA LMVFVAPALG IAACQVLIFR EIHASLVPGP 240
  241 SERAGRRRRG RRTGSPSEGA HVSAAMAKTV RMTLVIVIVY VLCWAPFFLV QLWAAWDPEA 300
  301 PLERPPFVLL MLLASLNSCT NPWIYASFSS SVSSELRSLL CCAQRHTTHS LGPQDESCAT 360
  361 ASSSLMKDTP S