YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GIMA5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDHGFEELS TRTHDLNVRR LTKGNINFLL STGQETYSVE DSGLLRILLV GKSGCGKSAT  60
   61 GNSILRRPAF ESRLRGQSVT RTSQAEMGTW EGRSFLVVDT PPIFESKIQN QDMDKDIGNC 120
  121 YLMCAPGPHV LLLVTQLGRY TVEDAMAVRM VKQIFGVGVM RYMIVLFTHK EDLADESLEE 180
  181 FVTHTGNLDL HRLVQECGRR YCAFNNKASG EEQQGQLAEL MALVRRLEQE HEGSFHSNDL 240
  241 FVYTQVFLRG GYSEHQEPYK FYLTKVRQEV EKQKRELEEQ EGSWMAKMLC RVTSCLDWHI 300
  301 AVSVLLIVLG LTLLITLINM YIGRWK

Type	Start	End	Confidence
Non-Cytoplasmic	1	297	0.66
Transmembrane Helix	298	322	0.87
Cytoplasmic	323	326	0.61