YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18308176
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPADIPASL PLGLCLLLAS GFGHAGKLLV VPMDGSHWFT MQMVVEKLLP KGHEVVVVVP  60
   61 EVSWQLGKPL NFTVKTYSVS HTQEDLNREF KFFIDSQWKT QQEGGVLPLL TSPAQGFFEL 120
  121 LFSHCRSLFK DKKLVEYLKQ SSFDAVFLDP FDVCGLTVAK YFSLPSVVFS RGIFCHYLEE 180
  181 GSQCPSPPSY VPRGILKLTD TMTFKERVWN LLSYMGEHAF CPSFFKTATD IASEVLQTPV 240
  241 TMTDLFSPVS VWLLRTDFTL ELPRPVMPNV IHIGGINCHQ RKPLSKEFEA YVNASGEHGI 300
  301 VVFSLGSMVS EIPEKKAMEI AEALGRIPQT VLWRYTGTRP SNLAKNTILV KWLPQNDLLG 360
  361 HPKARAFITH SGSHGIYEGI CNGVPMVMMP LFGDQMDNAK RMETRGAGVT LNVLEMTADD 420
  421 LENALKTVIN NKSYKENIMR LSSLHKDRPI EPLDLAVFWV EYVMRHKGAP HLRPAAHDLT 480
  481 WYQYHSLDVI GFLLAIVFTV VFIVYKSCAY GCRKCFGGKG RVKKSHKSKT H

Type	Start	End	Confidence
Signal Peptide	1	25	0.98
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	488	0.99
Transmembrane Helix	489	509	0.76
Cytoplasmic	510	531	0.80