YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39A4_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	333	0.99
Transmembrane Helix	334	357	0.91
Cytoplasmic	358	365	0.88
Transmembrane Helix	366	388	0.89
Non-Cytoplasmic	389	416	0.91
Transmembrane Helix	417	438	0.88
Cytoplasmic	439	566	0.93
Transmembrane Helix	567	589	0.92
Non-Cytoplasmic	590	595	0.86
Transmembrane Helix	596	617	0.91
Cytoplasmic	618	626	0.87
Transmembrane Helix	627	649	0.91
Non-Cytoplasmic	650	656	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPKSLTQGL LLAMLVGTAA MVQPYHLLSL LTSGQGALDR TALDGLLNTL VARVHCTDGP  60
   61 CEKCLSVETA LALGKPDKPQ LAPESVLESR YITYLSAAAA LYLNDPEKTC KDIRAGLLAS 120
  121 HVDDYLAKLE SPEAMTLGLS QLLQKIEAHD ASQPTREETC VDVPQLLEEA EEAGVSRSPG 180
  181 LVLTALLDHV LNGSCFQGLP SPQYFVDFVF RQLSSKPRNI TLPELEDLMH HLGVGGEDHS 240
  241 DHGDHVDHSH LDREANHQDS ELHATHNSSS SVWDTLCLSA KDVMAVYGLS EEAGVSPQAW 300
  301 AQLTPALVQQ QLSEACSSSP IIHVQDQLSQ AERYLYGSLA TLLICLCAVF GLLLLTCAKC 360
  361 STATHYIMQT FLSLAVGALT GDALLHLIPK VLGLHTHSGE VHSHEEESIG GQSTWRLLAV 420
  421 LGGFYIFFLF ESFFNLLLPR DQDHEKDGPC SHGGHSHGIS LQLSPSNLRQ SKQPHESSRS 480
  481 DLVTEETPEL LNPDTRRLRA ELRMLPYLIT LGDAVHNFAD GLAVGAAFSS TWKTGLATSL 540
  541 AVFCHELPHE LGDFAALLHA GLTVKRALLL NLASALTAFA GLYVALAVGV GEEGETWILA 600
  601 VATGLFLYVA LCDMLPAMMN VRDQRPWLLF LLHNVGLLGG WTILLLLSLY EDSITF