YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CKLF_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPQKVVDH QPFCLSLKCF VKTLRLVVTV ASMIFFIVAQ APEPYIVITG FEVTIILFLI  60
   61 ALYMCSLDKT MRSFFWPLLD VINSVVTTLF MLIVSVSALI PETSTMIMVG GVFGFLTVIC 120
  121 TVADCALMCQ KLRFRPHGPY QNRSATDVDD S

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	39	0.95
Non-Cytoplasmic	40	45	0.77
Transmembrane Helix	46	67	0.92
Cytoplasmic	68	75	0.89
Transmembrane Helix	76	100	0.86
Non-Cytoplasmic	101	105	0.85
Transmembrane Helix	106	128	0.91
Cytoplasmic	129	151	0.97