YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TSN2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRFRGGLRC IKYLLLGFNL LFWLAGSAVI AFGLWFRFGG TIKDLSSEEK SPEYFYVGLY  60
   61 VLVGAGALMM AVGFFGCCGA MRESQCVLGS FFTCLLVIFA AEVTTGVFAF IGKDVAIRHV 120
  121 QSMYEEAYSD YVRDRGRGNG TLITFHSAFQ CCGKESSEQV QPTCPKELPG HKNCIDKIET 180
  181 IISVKLQLIG IVGIGIAGLT IFGMIFSMVL CCAIRNSRDV I

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	36	0.88
Non-Cytoplasmic	37	55	0.93
Transmembrane Helix	56	78	0.92
Cytoplasmic	79	86	0.83
Transmembrane Helix	87	111	0.87
Non-Cytoplasmic	112	188	0.98
Transmembrane Helix	189	214	0.87
Cytoplasmic	215	221	0.95