YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149043421, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGQGPGPP KGDCDEALSA SEQQVAQDTE EVFRSYVFYL HQQEQETQGA AAPANPEMDN  60
   61 LSLEPNSVLG QVGRQLALIG DDINRRYDTE FQNLLEQLQP TAGNAYELFT KIASSLFKSG 120
  121 ISWGRVVALL GFGYRLALYV YQRGLTGFLG QVTCFLADII LHHYIARWIA QRGGWVAALS 180
  181 LRRDPILSVV VIFGVVLLGQ FVVHRFFRS

Type	Start	End	Confidence
Cytoplasmic	1	120	0.96
Transmembrane Helix	121	138	0.91
Non-Cytoplasmic	139	146	0.67
Transmembrane Helix	147	166	0.93
Cytoplasmic	167	185	0.84
Transmembrane Helix	186	204	0.97
Non-Cytoplasmic	205	209	0.67