YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSRD_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMASFGAL ALLLLSGLSC CSAEACLEPQ ITPSYYTTSD AVISTETVFI VEISLTCKNR  60
   61 VQNMALYADV SGKQFPVTRG QDVGRYQVSW SLEHKSAHAG TYEVRFFDEE SYSLLRKAQR 120
  121 NNEDVSIIPP LFTVSVDHRG TWNGPWVSTE VLAAAIGIVI YYLAFSAKSH IQA

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	173	0.91