YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.95
Transmembrane Helix	61	80	0.90
Non-Cytoplasmic	81	89	0.83
Transmembrane Helix	90	112	0.89
Cytoplasmic	113	131	0.85
Transmembrane Helix	132	154	0.83
Non-Cytoplasmic	155	229	0.96
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	259	0.90
Transmembrane Helix	260	282	0.89
Non-Cytoplasmic	283	312	0.84
Transmembrane Helix	313	331	0.93
Cytoplasmic	332	341	0.84
Transmembrane Helix	342	365	0.90
Non-Cytoplasmic	366	397	0.81
Transmembrane Helix	398	415	0.83
Cytoplasmic	416	444	0.72
Transmembrane Helix	445	463	0.90
Non-Cytoplasmic	464	481	0.73
Transmembrane Helix	482	500	0.95
Cytoplasmic	501	520	0.93
Transmembrane Helix	521	541	0.96
Non-Cytoplasmic	542	559	0.92
Transmembrane Helix	560	581	0.93
Cytoplasmic	582	635	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKSAENGI YSVSGDEKKG PLIVSGPDGA PSKGDGPAGL GAPSSRLAVP PRETWTRQMD  60
   61 FIMSCVGFAV GLGNVWRFPY LCYKNGGGVF LIPYVLIALV GGIPIFFLEI SLGQFMKAGS 120
  121 INVWNICPLF KGLGYASMVI VFYCNTYYIM VLAWGFYYLV KSFTTTLPWA TCGHTWNTPD 180
  181 CVEIFRHEDC ANASLANLTC DQLADRRSPV IEFWENKVLR LSTGLEVPGA LNWEVTLCLL 240
  241 ACWVLVYFCV WKGVKSTGKI VYFTATFPYV VLVVLLVRGV LLPGALDGII YYLKPDWSKL 300
  301 GSPQVWIDAG TQIFFSYAIG LGALTALGSY NRFNNNCYKD AIILALINSG TSFFAGFVVF 360
  361 SILGFMATEQ GVHISKVAES GPGLAFIAYP RAVTLMPVAP LWAALFFFML LLLGLDSQFV 420
  421 GVEGFITGLL DLLPASYYFR FQREISVALC CALCFVIDLS MVTDGGMYVF QLFDYYSASG 480
  481 TTLLWQAFWE CVVVAWVYGA DRFMDDIACM IGYRPCPWMK WCWSFFTPLV CMGIFIFNVV 540
  541 YYKPLVYNNT YVYPWWGEAM GWAFALSSML CVPLHLLGCL LRAKGTMAER WQHLTQPIWG 600
  601 LHHLEYRAQD ADVRGLTTLT PVSESSKVVV VESVM