YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT1D_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPNQSLEG LPQEASNRSL NATGAWDPEV LQALRISLVV VLSIITLATV LSNAFVLTTI  60
   61 LLTKKLHTPA NYLIGSLATT DLLVSILVMP ISIAYTTTRT WNFGQILCDI WVSSDITCCT 120
  121 ASILHLCVIA LDRYWAITDA LEYSKRRTAG HAAAMIAAVW AISICISIPP LFWRQATAHE 180
  181 EMSDCLVNTS QISYTIYSTC GAFYIPSILL IILYGRIYVA ARSRILNPPS LYGKRFTTAQ 240
  241 LITGSAGSSL CSLNPSLHES HTHTVGSPLF FNQVKIKLAD SILERKRISA ARERKATKTL 300
  301 GIILGAFIIC WLPFFVVSLV LPICRDSCWI HPALFDFFTW LGYLNSLINP VIYTVFNEDF 360
  361 RQAFQRVVHF RKAS

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.87
Transmembrane Helix	36	61	0.85
Cytoplasmic	62	71	0.79
Transmembrane Helix	72	94	0.89
Non-Cytoplasmic	95	110	0.77
Transmembrane Helix	111	131	0.83
Cytoplasmic	132	149	0.86
Transmembrane Helix	150	173	0.90
Non-Cytoplasmic	174	193	0.96
Transmembrane Helix	194	215	0.89
Cytoplasmic	216	298	0.92
Transmembrane Helix	299	321	0.89
Non-Cytoplasmic	322	336	0.81
Transmembrane Helix	337	356	0.88
Cytoplasmic	357	374	0.90