YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT1B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQGIQCAP PPPATSQTGV PLANLSHNCS ADDYIYQDSI ALPWKVLLVA LLALITLATT  60
   61 LSNAFVIATV YRTRKLHTPA NYLIASLAVT DLLVSILVMP ISTMYTVTGR WTLGQVVCDF 120
  121 WLSSDITCCT ASIMHLCVIA LDRYWAITDA VDYSAKRTPK RAAIMIVLVW VFSISISLPP 180
  181 FFWRQAKAEE EVLDCFVNTD HVLYTVYSTV GAFYLPTLLL IALYGRIYVE ARSRILKQTP 240
  241 NKTGKRLTRA QLITDSPGST SSVTSINSRV PEVPSESGSP VYVNQVKVRV SDALLEKKKL 300
  301 MAARERKATK TLGIILGAFI VCWLPFFIIS LVMPICKDAC WFHMAIFDFF NWLGYLNSLI 360
  361 NPIIYTMSNE DFKQAFHKLI RFKCTG

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.93
Transmembrane Helix	46	70	0.87
Cytoplasmic	71	81	0.81
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	120	0.83
Transmembrane Helix	121	141	0.88
Cytoplasmic	142	161	0.88
Transmembrane Helix	162	183	0.91
Non-Cytoplasmic	184	205	0.92
Transmembrane Helix	206	228	0.88
Cytoplasmic	229	310	0.98
Transmembrane Helix	311	332	0.92
Non-Cytoplasmic	333	343	0.74
Transmembrane Helix	344	365	0.75
Cytoplasmic	366	386	0.87