YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCKX2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	57	0.90
Non-Cytoplasmic	58	134	0.95
Transmembrane Helix	135	159	0.83
Cytoplasmic	160	174	0.81
Transmembrane Helix	175	199	0.84
Non-Cytoplasmic	200	205	0.74
Transmembrane Helix	206	227	0.93
Cytoplasmic	228	238	0.82
Transmembrane Helix	239	258	0.85
Non-Cytoplasmic	259	261	0.53
Transmembrane Helix	262	285	0.65
Cytoplasmic	286	506	0.66
Transmembrane Helix	507	530	0.88
Non-Cytoplasmic	531	542	0.69
Transmembrane Helix	543	565	0.84
Cytoplasmic	566	576	0.62
Transmembrane Helix	577	599	0.80
Non-Cytoplasmic	600	610	0.64
Transmembrane Helix	611	632	0.93
Cytoplasmic	633	639	0.68
Transmembrane Helix	640	659	0.95
Non-Cytoplasmic	660	670	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHQSATVR LLQEWCSHES PSGCRRHYNT RKKLKLIRVI GLVMGLVAVS TVPFSISAFT  60
   61 ETYSQNNRGE ASDVTGPRAA PGHRQRTLLD LNDKIRDYTP QPPASQEDRS ENGTDHAQGD 120
  121 YPKDVFSLEE RRKGAIILHV IGMIYMFIAL AIVCDEFFVP SLTVITEKLG ISDDVAGATF 180
  181 MAAGGSAPEL FTSLIGVFIA HSNVGIGTIV GSAVFNILFV IGMCALFSRE ILNLTWWPLF 240
  241 RDVSFYIVDL IMLIIFFLDN VIMWWESLLL LTAYFAYVVF MKFNVQVERW VKQMINRNKV 300
  301 VKVTVSEAQA KASTAGDKEE PTLPNKPRLQ RGGSSASLHN SLMRNSIFQL MIHTLDPLAE 360
  361 ELGSYGKLKY YDTMTEEGRF REKASILHKI AKKKCQVDEN ERQNGAANHV DYAAEKIELP 420
  421 NSTSTEVEMT PSSEASEPVQ NGNLSHSIEA ADAPQATETA EEDDDQPLSL SWPSNTRKQI 480
  481 TFLIVLPIVF PLWITLPDVR KPASKKFFPI TFFGSITWIA VFSYLMVWWA HQVGETIGIS 540
  541 EEIMGLTILA AGTSIPDLIT SVIVARKGLG DMAVSSSVGS NIFDITVGLP LPWLLYTIIH 600
  601 RFKPVTVSSN GLFCAIVLLF IMLIFVILSI ALCKWRMNKI LGFIMFGLYF AFLVVSVLLE 660
  661 DKVLECPVSI