YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8547535, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTAPGSGV SSLPLLLALV LGLVILQCVV ADGNTTRTPE TNGSLCGAPG ENCTGTTPRQ  60
   61 KSKTHFSRCP KQYKHYCIHG RCRFVMDEQT PSCICEKGYF GARCEQVDLF YLQQDRGQIL 120
  121 VVCLIGVMVL FIILVIGVCT CCHPLRKHRK KKKEEKMETL SKDKTPISED IQETNIA

Type	Start	End	Confidence
Signal Peptide	1	31	0.98
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	118	0.99
Transmembrane Helix	119	143	0.92
Cytoplasmic	144	177	0.98