YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EBP_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNMLPLHP YWPRHLRLDN FVPNDLPTWH ILVGLFSFSG VLIVITWLLS SRVSVVPLGT  60
   61 GRRLALCWFA VCTFIHLVIE GWFSFYHEIL LEDQAFLSQL WKEYSKGDSR YILSDGFIVC 120
  121 MESVTACLWG PLSLWVVIAF LRHQPFRFVL QLVVSVGQIY GDVLYFLTEL RDGFQHGELG 180
  181 HPLYFWFYFV IMNAIWLVIP GILVFDAIKH LTNAQSMLDN KVMKIKSKHN

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.98
Transmembrane Helix	28	49	0.93
Cytoplasmic	50	63	0.83
Transmembrane Helix	64	86	0.85
Non-Cytoplasmic	87	116	0.94
Transmembrane Helix	117	139	0.89
Cytoplasmic	140	147	0.81
Transmembrane Helix	148	167	0.92
Non-Cytoplasmic	168	184	0.89
Transmembrane Helix	185	207	0.91
Cytoplasmic	208	230	0.94