YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BAT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.84
Transmembrane Helix	30	51	0.92
Non-Cytoplasmic	52	64	0.72
Transmembrane Helix	65	87	0.90
Cytoplasmic	88	98	0.68
Transmembrane Helix	99	118	0.65
Non-Cytoplasmic	119	122	0.48
Transmembrane Helix	123	144	0.75
Cytoplasmic	145	148	0.51
Transmembrane Helix	149	172	0.85
Non-Cytoplasmic	173	179	0.47
Transmembrane Helix	180	202	0.89
Cytoplasmic	203	253	0.67
Transmembrane Helix	254	275	0.92
Non-Cytoplasmic	276	306	0.89
Transmembrane Helix	307	330	0.90
Cytoplasmic	331	348	0.92
Transmembrane Helix	349	368	0.95
Non-Cytoplasmic	369	376	0.81
Transmembrane Helix	377	399	0.88
Cytoplasmic	400	408	0.91
Transmembrane Helix	409	430	0.93
Non-Cytoplasmic	431	436	0.80
Transmembrane Helix	437	457	0.94
Cytoplasmic	458	487	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETSPRRRR EDEKSVHSTE PKTTSLQKEV GLLSGICIIV GTIIGSGIFI SPKSVLANTE  60
   61 SVGPCLIIWA ACGVLATLGA LCFAELGTMI TKSGGEYPYL MEAFGPIPAY LFSWTSLIVM 120
  121 KPSSFAIICL SFSEYVCAAF YLGCRPPAVV VKLLAAAAIL LITTVNALSV RLGSYVQNVF 180
  181 TAAKLVIVAI IIISGLVLLA QGNVKNFQNS FEGSQTSVGS ISLAFYNGLW AYDGWNQLNY 240
  241 ITEELRNPYR NLPMAIVIGI PLVTVCYILM NIAYFTVMTP TELLQSQAVA VTFGDRVLYP 300
  301 ASWVVPLFVA FSTIGAANGT CFTAGRLIYV AGREGHMLKV LSYISVKRLT PAPALVFYGI 360
  361 IAIIYIIPGD INSLVNYFSF AAWLFYGMTI LGLVVMRFTR KDLERPIKVP IFIPIIVILV 420
  421 SVFLILAPII SSPAWEYLYC VLFILSGLIF YFLFVHYKFR WAQKISRPIT KHLQMLMEVV 480
  481 PPEKDPE