YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NMUR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPNASTGL LSCNDSEFKE HFDLEDLNLT HEDLRLKYLG PQQVKQFLPI CVTYLLIFVV  60
   61 GTLGNGLTCT VILRQKAMHT PTNFYLFSLA VSDLLVLLVG LPLELYEMQH NYPFQLGAGG 120
  121 CYFRILLLET VCLASVLNVT ALSVERYVAV VHPLQAKSVM TRTHVRRMLG AIWVFAILFS 180
  181 LPNTSLHGLS PLYVPCRGPV PDSVTCTLVR PQFFYKLVIQ TTILLFFCLP MVTISVLYLL 240
  241 IGLRLRRERM LLQEEVKGRI SAAARQASHR SIQLRDRERR QVTKMLIALV IVFGTCWVPF 300
  301 HADRLMWSMV SHWTDGLRLA FQSVHLASGV FLYLGSAANP ELYNLMSTRF RESFRETLGL 360
  361 GTRCCHRHQP RHDSHSHLRL TTVSTLCDRN SRDVPLAENR DPGCEQETDP PE

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.88
Transmembrane Helix	50	73	0.83
Cytoplasmic	74	82	0.88
Transmembrane Helix	83	103	0.94
Non-Cytoplasmic	104	121	0.84
Transmembrane Helix	122	144	0.85
Cytoplasmic	145	164	0.90
Transmembrane Helix	165	185	0.86
Non-Cytoplasmic	186	220	0.90
Transmembrane Helix	221	242	0.94
Cytoplasmic	243	281	0.98
Transmembrane Helix	282	302	0.92
Non-Cytoplasmic	303	320	0.90
Transmembrane Helix	321	343	0.84
Cytoplasmic	344	412	0.97