YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXB4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWGFLQGIL SGVNKYSTAL GRIWLSVVFI FRVLVYVVAA EEVWDDEQKD FICNTKQPGC  60
   61 PNVCYDEFFP VSHVRLWALQ LILVTCPSLL VVMHVAYREE RERKHRLKHG PDAPALYSNL 120
  121 SKKRGGLWWT YLLSLIFKAA VDSGFLYIFH CIYKDYDMPR VVACSVQPCP HTVDCYISRP 180
  181 TEKKVFTYFM VVTAAICILL NLSEVAYLVG KRCMEVFRPR RQKTSRRHQL PDTCPPYVIS 240
  241 KGHPQDESTV LTKAGMATVD AGVYP

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	40	0.90
Non-Cytoplasmic	41	75	0.98
Transmembrane Helix	76	97	0.95
Cytoplasmic	98	126	0.98
Transmembrane Helix	127	149	0.87
Non-Cytoplasmic	150	185	0.92
Transmembrane Helix	186	210	0.87
Cytoplasmic	211	265	0.94