YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSHPRPWA SLLLVDLALL GLLQSSLGTL LPPGLPGLWL EGTLRLGVLW GLLKVGGLLR  60
   61 LVGTFLPLLC LTNPLFFSLR ALVGSTMSTS VVRVASASWG WLLADYGAVA LSLAVWAVLS 120
  121 PAGAQEKEPG QENNRALMIR LLRLSKPDLP FLIVAFIFLA MAVWWEMFIP HYSGRVIDIL 180
  181 GGDFDPDAFA SAIFFMCLFS VGSSLSAGCR GGSFLFAESR INLRIREQLF SSLLRQDLAF 240
  241 FQETKTGELN SRLSSDTSLM SQWLSLNANI LLRSLVKVVG LYYFMLQVSP RLTFLSLLDL 300
  301 PLTIAAEKVY NPRHQAVLKE IQDAVAKAGQ VVREAVGGLQ TVRSFGAEEQ EVRRYKEALE 360
  361 RCRQLWWRRD LEKSLYLVIQ RVMALGMQVL ILNVGVQQIL AGEVTRGGLL SFLLYQEEVG 420
  421 HHVQNLVYMY GDMLSNVGAA EKVFSYLDRR PNLPNPGTLA PPRLEGRVEF QDVSFSYPSR 480
  481 PEKPVLQGLT FTLHPGKVTA LVGPNGSGKS TVAALLQNLY QPTGGQLLLD GEPLVQYDHH 540
  541 YLHRQVVLVG QEPVLFSGSV KDNIAYGLRD CEDAQVMAAA QAACADDFIG EMTNGINTEI 600
  601 GEKGSQLAVG QKQRLAIARA LVRNPRVLIL DEATSALDAE CEQALQTWRS QEDRTMLVIA 660
  661 HRLHTVQNAD QVLVLKQGQL VEHDQLRDEQ DVYAHLVQQR LEA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.75
Transmembrane Helix	9	31	0.74
Non-Cytoplasmic	32	45	0.62
Transmembrane Helix	46	71	0.73
Cytoplasmic	72	75	0.50
Transmembrane Helix	76	95	0.67
Non-Cytoplasmic	96	101	0.62
Transmembrane Helix	102	123	0.82
Cytoplasmic	124	146	0.90
Transmembrane Helix	147	168	0.89
Non-Cytoplasmic	169	188	0.93
Transmembrane Helix	189	214	0.86
Cytoplasmic	215	268	0.95
Transmembrane Helix	269	286	0.57
Non-Cytoplasmic	287	703	0.85