YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NEUR1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGAEPSRPP GPPSYWTGRR GQGLAAIFLL LVSAAGSEAR TEDDFSLVQP LVTMEQLLWV  60
   61 SGKQIGSVDT FRIPLITATP RGTLLAFAEA RKKSASDEGA KFIAMRRSTD QGSTWSSTAF 120
  121 IVDDGEASDG LNLGAVVNDV DTGVVFLIYT LCAHKVNCQV ASTMLVWSKD DGVSWSPPRN 180
  181 LSVDIGTEMF APGPGSGIQK QREPWKGRLI VCGHGTLERD GVFCLLSDDH GASWHYGTGV 240
  241 SGIPFGQPKH DHDFNPDECQ PYELPDGSVI INARNQNNYH CRCRIVLRSY DACDTLRPRD 300
  301 VTFDPELVDP VVAAGALATS SGIVFFSNPA HPEYRVNLTL RWSFSNGTFW QKERVQLWPG 360
  361 PSGYSSLTAL ENSTDGKKQP PQLFVLYEKG LNRYTESISM VKISVYGTL

Type	Start	End	Confidence
Signal Peptide	1	39	0.94
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	409	0.99