YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POMT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.94
Transmembrane Helix	32	54	0.88
Non-Cytoplasmic	55	89	0.95
Transmembrane Helix	90	110	0.92
Cytoplasmic	111	122	0.85
Transmembrane Helix	123	142	0.92
Non-Cytoplasmic	143	147	0.70
Transmembrane Helix	148	169	0.80
Cytoplasmic	170	175	0.71
Transmembrane Helix	176	196	0.90
Non-Cytoplasmic	197	205	0.74
Transmembrane Helix	206	225	0.87
Cytoplasmic	226	229	0.54
Transmembrane Helix	230	249	0.79
Non-Cytoplasmic	250	261	0.58
Transmembrane Helix	262	288	0.80
Cytoplasmic	289	592	0.52
Transmembrane Helix	593	619	0.82
Non-Cytoplasmic	620	631	0.42
Transmembrane Helix	632	655	0.87
Cytoplasmic	656	661	0.38
Transmembrane Helix	662	684	0.86
Non-Cytoplasmic	685	747	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNRSMGRED TLGVLPSLLF CKMLRFLKRP LVVTIDINLN LVALTVLGLL TRLWQLSYPR  60
   61 AVVFDEVYYG QYISFYMKRV FFLDDSGPPF GHMLLALGGW LGGFDGNFLW NRIGAEYSSN 120
  121 VPVWSLRLLP ALAGALSVPM AYQIVLELHF SHCTAMGAAL LMLIENALIT QSRLMLLESI 180
  181 LIFFNLLAVL SYLKFFNSQT HSPFSVHWWL WLMLTGVSCS CAVGIKYMGI FTYLLVLSIA 240
  241 AVHAWHLIGD QTLSNICVLS HLLARAVALL VVPVFLYLLF FYVHLMLLYR SGPHDQIMSS 300
  301 AFQASLEGGL ARITQGQPLE VAFGSQVTLK SVSGKPLPCW LHSHKNTYPM IYENGRGSSH 360
  361 QQQVTCYPFK DINNWWIVKD PGRHQLVVNN PPRPVRHGDI VQLVHGMTTR LLNTHDVAAP 420
  421 LSPHSQEVSC YIDYNISMPA QNLWKLDIVN RESNQDTWKT ILSEVRFVHV NTSAILKLSG 480
  481 AHLPDWGFRQ LEVVGEKLSL GPHESMVWNV EEHRYGRGHE QKERELELHS PTQHDISRNL 540
  541 SFMARFSELQ WKMLTLKNED LEHQYSSTPL EWLTLDTNIA YWLHPRTSAQ IHLLGNIVIW 600
  601 TSASLATVAY TLLFFWYLLR RRRNICDLPE DAWSHWVLAG ALCIGGWALN YLPFFLMERM 660
  661 LFLYHYLPAL TFQILLLPIV MQHASDHLCR SQLQRNVFSA LVVAWYSSAC HVSNMLRPLT 720
  721 YGDTSLSPGE LRALRWKDSW DILIRKY