YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19911225
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.88
Transmembrane Helix	24	43	0.93
Cytoplasmic	44	59	0.84
Transmembrane Helix	60	82	0.87
Non-Cytoplasmic	83	99	0.79
Transmembrane Helix	100	122	0.88
Cytoplasmic	123	135	0.88
Transmembrane Helix	136	155	0.88
Non-Cytoplasmic	156	171	0.70
Transmembrane Helix	172	192	0.90
Cytoplasmic	193	199	0.71
Transmembrane Helix	200	219	0.91
Non-Cytoplasmic	220	271	0.96
Transmembrane Helix	272	291	0.93
Cytoplasmic	292	309	0.81
Transmembrane Helix	310	328	0.85
Non-Cytoplasmic	329	365	0.84
Transmembrane Helix	366	387	0.63
Cytoplasmic	388	401	0.59
Transmembrane Helix	402	418	0.42
Non-Cytoplasmic	419	453	0.70
Transmembrane Helix	454	475	0.93
Cytoplasmic	476	573	0.91
Transmembrane Helix	574	596	0.86
Non-Cytoplasmic	597	598	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGHVEEGSE LGEQKVLIDN PADILVIAAY FLLVIGVGLW SMFRTNRGTV GGYFLAGRSM  60
   61 VWWPVGASLF ASNIGSGHFV GLAGTGATSG LAVAGFEWNA LFVVLLLGWL FVPVYLTAGV 120
  121 ITMPQYLRKR FGGRRIRLYL SVLSLFLYIF TKISVDMFSG AVFIQQALGW NIYASVIALL 180
  181 GITMIYTVTG GLAALMYTDT VQTFVILAGA FILTGYAFHE VGGYSGLFDK YLGAVTSLTV 240
  241 SKDPAVGNIS STCYQPRPDS YHLLRDPVTG DLPWPALLLG LTIVSGWYWC SDQVIVQRCL 300
  301 AGKNLTHIKA GCILCGYLKL MPMFLMVMPG MISRILYPDE VACVVPERPS LTAAAHSSPW 360
  361 ISTHACGLGR VIGSCCWLEG FGWCSLWQCP WLGCQWCRQH RAASSSITFS LSPATWRLQC 420
  421 PLSLCWHSLC PVLMRSCVRP SACPAIFCRV HYPYFAIILF FCSGFLTLAI SLCTAPIPQK 480
  481 HLHRLVFSLR HSKEEREDLD AEELEGPAPP PVQNGCQECA MGIEEVQSPA PGLLRQCLLW 540
  541 FCGMSKSGSG SPPPTTEEVA ATTRRLEDIS EDPSWARVVN LNALLMMTVA VFLWGFYA