YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RAMP3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPAQRLHL LPLLLLLCGE CAQVCGCNET GMLERLPRCG KAFAEMMQKV DVWKWCNLSE  60
   61 FIVYYESFTN CTEMETNIVG CYWPNPLAQS FITGIHRQFF SNCTVDRTHW EDPPDEVLIP 120
  121 LIAVPVLLTV AMAGLVVWRS KRTDRLL

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	116	0.98
Transmembrane Helix	117	138	0.86
Cytoplasmic	139	147	0.85