YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56090291, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.51
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	209	0.83
Transmembrane Helix	210	232	0.82
Cytoplasmic	233	275	0.86
Transmembrane Helix	276	297	0.90
Non-Cytoplasmic	298	342	0.83
Transmembrane Helix	343	362	0.71
Cytoplasmic	363	368	0.56
Transmembrane Helix	369	397	0.77
Non-Cytoplasmic	398	403	0.58
Transmembrane Helix	404	424	0.78
Cytoplasmic	425	445	0.84
Transmembrane Helix	446	468	0.89
Non-Cytoplasmic	469	476	0.63
Transmembrane Helix	477	499	0.73
Cytoplasmic	500	581	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKAFFPTC CASADSGLLV GRWVPGQNSA VILAVVHFPF IPIQVKELLA QVQKASQVQV  60
   61 TVLGTWCHRQ QEPEESLGKF LEGLGAIFSH NPWLQLCREK GTRFWSCKAT YHQMSSTLDT 120
  121 PTEDQVMLIF YDQRKLLLSW LHPPPVLPDC QIGDSTASTG GLADIFDTVA RSEVLFRNDQ 180
  181 FDEGPVRLSH WQSEGVEASI LVELAKRASG PVCLLLASLL SLISAASACR LWKLGPLAFI 240
  241 RSKLSTCEQL QHRLKHLSFI FSTEKAQSPM QLMRKANMLV SVLLDVALGL LLLSWLHSNN 300
  301 RIGQLANALV PVADRVAEEL QHLLQWLMGA PAGLKMNRAL DQVLGRFFLY HIHLWISYIH 360
  361 LMSPFIEHIL WHVGLSACLG LTVALSIFSD IIALLTFHIY CFYVYGARLY CLKIYGLSSL 420
  421 WRLFRGKKWN VLRQRVDSCS YDLDQLFIGT LLFTILVFLL PTTALYYLVF TLLRLLVITV 480
  481 QGLIHLLVDL INSLPLYSLG LRLCRPYRLA AGVKFRVLEK EAGRPLRLLM QINPLPYSHV 540
  541 VHTYRLPSCG CHPKHSWGTL CRKLFFGELI YPWRQREDKQ D