YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12407841
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAAEPEAPAL CAYRGPATMA GVWAPEHSVE AHSNQSSAAD GCGSVSVAFP ITMMVTGFVG  60
   61 NALAMLLVVR SYRRRESKRK KSFLLCIGWL ALTDLVGQLL TSPVVILVYL SQRRWEQLDP 120
  121 SGRLCTFFGL TMTVFGLSSL LVASAMAVER ALAIRAPHWY ASHMKTRATP VLLGVWLSVL 180
  181 AFALLPVLGV GRYSVQWPGT WCFISTGPAG NETDSAREPG SVAFASAFAC LGLLALVVTF 240
  241 ACNLATIKAL VSRCRAKAAA SQSSAQWGRI TTETAIQLMG IMCVLSVCWS PLLIMMLKMI 300
  301 FNQMSVEQCK TQMGKEKECN SFLIAVRLAS LNQILDPWVY LLLRKILLRK FCQFSLCFNR 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.88
Transmembrane Helix	47	69	0.90
Cytoplasmic	70	84	0.87
Transmembrane Helix	85	107	0.89
Non-Cytoplasmic	108	126	0.86
Transmembrane Helix	127	148	0.93
Cytoplasmic	149	168	0.90
Transmembrane Helix	169	191	0.91
Non-Cytoplasmic	192	223	0.94
Transmembrane Helix	224	247	0.90
Cytoplasmic	248	274	0.90
Transmembrane Helix	275	297	0.88
Non-Cytoplasmic	298	360	0.79