YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPT2B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.94
Transmembrane Helix	97	118	0.80
Non-Cytoplasmic	119	138	0.76
Transmembrane Helix	139	160	0.81
Cytoplasmic	161	174	0.54
Transmembrane Helix	175	200	0.69
Non-Cytoplasmic	201	221	0.65
Transmembrane Helix	222	241	0.55
Cytoplasmic	242	361	0.70
Transmembrane Helix	362	387	0.87
Non-Cytoplasmic	388	412	0.67
Transmembrane Helix	413	439	0.80
Cytoplasmic	440	454	0.61
Transmembrane Helix	455	476	0.84
Non-Cytoplasmic	477	484	0.81
Transmembrane Helix	485	506	0.91
Cytoplasmic	507	524	0.93
Transmembrane Helix	525	547	0.88
Non-Cytoplasmic	548	553	0.65
Transmembrane Helix	554	575	0.90
Cytoplasmic	576	695	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPWPELENA HPNPNKFIEG ASGPQSSIPD KDKGTSKTND SGTPVAKIEL LPSYSALVLI  60
   61 EEPPEGNDPW DLPELQDNGI KWSERDSKGK ILCIFQGIGK FILLLGFLYL FVCSLDVLSS 120
  121 AFQLVGGKMA GQFFSNNSIM SNPVAGLVIG VLVTVMVQSS STSSSIIVSM VASSLLSVRA 180
  181 AIPIIMGANI GTSITNTIVA LMQAGDRNEF RRAFAGATVH DFFNWLSVLV LLPLEAATHY 240
  241 LEKLTNLVLE TFSFQNGEDA PDILKVITDP FTKLIIQLDK KVIQQIAMGD SEAQNKSLIK 300
  301 IWCKTISNVI EENVTVPSPD NCTSPSYCWT DGIQTWTIQN VTEKENIAKC QHIFVNFSLP 360
  361 DLAVGIILLT VSLLILCGCL IMIVKLLGSV LRGQVATVIK KTLNTDFPFP FAWLTGYLAI 420
  421 LVGAGMTFIV QSSSVFTSAM TPLIGIGVIS IERAYPLTLG SNIGTTTTAI LAALASPGNT 480
  481 LRSSLQIALC HFFFNISGIL LWYPIPFTRL PIRLAKGLGN ISAKYRWFAV FYLIFFFLLT 540
  541 PLTVFGLSLA GWPVLVGVGV PIILLILLVL CLRMLQARCP RILPLKLRDW NFLPLWMHSL 600
  601 KPWDNIISLA TSCFQRRCCC CCRVCCRVCC MVCGCKCCRC SKCCKNLEEE EKEQDVPVKA 660
  661 SGGFDNTAMS KECQDEGKGQ VEVLGMKALS NTTVF