YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94450098, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAATTTGL EAPEPMPSYA EMLQRSWASA LAAARGCGDC GWGLARRGLA EHAHLAAPEL  60
   61 LLAVLCALGW TALRSAATTR IFRPLAKRCR LQPRDAARLP ESAWKLLFYL ACWSYCAYLL 120
  121 LGTSYPFFHD PPSVFYGWRS GMAVPWDIAV AYLLQGSFYC HSVYATVYMD SWRKDSVVML 180
  181 VHHVVTLLLI ASSYAFRYHN VGLLVFFLHD VSDVQLEFTK LNIYFKARGG AYHRLHGLVA 240
  241 NLGCLSFCFC WFWFRLYWFP LKVLYATWHC SLQSVPDIPY YFFFNTLLLL LLVMNIYWFL 300
  301 YIVAFAAKVL TGQMRELEDL REYDSLEAQT AKPCRAEKPL RNGLVKDKLF

Type	Start	End	Confidence
Cytoplasmic	1	25	0.61
Transmembrane Helix	26	45	0.49
Non-Cytoplasmic	46	54	0.71
Transmembrane Helix	55	73	0.83
Cytoplasmic	74	105	0.85
Transmembrane Helix	106	128	0.90
Non-Cytoplasmic	129	147	0.85
Transmembrane Helix	148	168	0.82
Cytoplasmic	169	177	0.79
Transmembrane Helix	178	198	0.80
Non-Cytoplasmic	199	234	0.55
Transmembrane Helix	235	259	0.84
Cytoplasmic	260	277	0.39
Transmembrane Helix	278	292	0.72
Non-Cytoplasmic	293	293	0.02
Transmembrane Helix	294	308	0.73
Cytoplasmic	309	350	0.62